Informationshanteringssystem (LIMS) - 1DL470
Spring 2012
Contents
- News
- Literature
- Assignments
- Teachers
- Schedule
- Goal, content and prerequisite
- Organization and examination
- OH slides and compendium
- Reading instructions
- Miscellaneuos information
- F.A.Q.
News
- 2012-01-12 - course starts Monday, January 16 at 10.15 am in room
1145.
- 2012-01-12 - this page made accesible /KO
Literature
-
There is no required book you have to buy but the following is an
introduction to web-based systems.
- Darrel Ince: Developing Distributed and E-commerce Applications, 2nd ed, Addison-Wesley, 2003 (available e.g. at Akademibokhandeln).
- Papers:
- Gibbon, Gerst A.: "A brief history of LIMS", Laboratory automation and information management, v32, 1996.
- McDowall, R. D., Pearce, J. C. and Murkitt, G. S.: "Laboratory Information Management Systems
- Part I. Concepts", Journal of Pharmaceutical and Biomedical
Analysis, v6, n4, pp. 339-359, 1988.
- McDowall, R. D., Pearce, J. C. and Murkitt, G. S.: "Laboratory Information Management Systems - Part II. Implementation", Journal of Pharmaceutical and Biomedical Analysis, v6, n4, pp. 361-381, 1988.
- Hinton, M. and Hinton P. R. Jr., "The LIMS Database", Laboratory Automation and Information Management, v1, n3, pp. 161- 171, 1996.
- O'Leary, K. M., "Selecting
the Right LIMS: Critiquing technological strengths and limitations",
Scientific Computing,
http://www.scientificcomputing.com/Selecting-the-Right-LIMS.aspx
(retrieved Jan 2012).
- Wood, S., "Comprehensive
Laboratory Informatics: A Multilayer Approach", American
Laboratory, September, 2007.
- CAP Today, Only time will
tell, but LIS experts offer a forecast, CAP Today, November, 2005.
- ....
- ....
- ...
Assignments
- Instructions and material for the lab assignment can be found here.
- (to be updated) Instructions and material for the LIMS project can be found here.
You will have a chance to demonstrate your solution during:
Feb 3, 8am - noon
You can also demo your solution earlier if you wish. Book a time slot with TA.
Teachers
- Kjell Orsborn, examinator, lecturer
- Contact info: email: kjell.orsborn@it.uu.se, phone: 471 1154, room 1321
- My schedule and office hours: here
- Minpeng Zhu, course assistant, email: minpeng.zhu@it.uu.se, phone: 471 3155, room 1311, office hours: Fridays 13-17.
Schedule
| No: | Subject: | Book Ch: | Tchr: | |
| |
||||
| L1 | Intro to LIMS and project | KO | ||
| L2 | Intro to LIMS and project cont. | KO | ||
| T1 | Intro to assignment | MZ |
||
| T2 | Intro to LIMS project | MZ |
||
| L3 | Intro to web architectures | KO | ||
| L4 | LIMS in Biotech? | MT | ||
| L5 | Intro to web architecture cont. | KO | ||
| L6 | to be announced | KO | ||
| L7 | to be announced | KO | ||
| L8 | to be announced | KO | ||
| L9 | to be announced | KO | ||
| L10 | to be announced | KO | ||
| L11 | to be announced | KO | ||
| L12 | to be announced | KO | ||
| L13 | to be announced | KO | ||
Goal, content and prerequisites
Organization and examination
OH slides and lecture material
Lecture slides:
Introduction to LIMS: LIMS01-vt2011-intro.pdf
Introduction to Web system architectures: LIMS02-vt2011-architectures
Guest lecture:
Reading instructions
Miscellaneous information
- Here you find a list of links with useful material for the course assignments, projects and presentations.
- The link to the "Fundamentals of Database Systems" book.
- Addison Wesley's Database
Place where you can find material within the database area.
- The link to the "Databasteknik" book at the publisher Studentlitteratur web site. A companion web site also exist for the book including a web-course on databases and a database dictionary in swedish.