Publications

Publications produced by researchers at the Centre for Image Analysis are listed below.

Most Recent Publications

• Cross-Sim-NGF: FFT-Based Global Rigid Multimodal Alignment of Image Volumes using Normalized Gradient Fields. Johan Öfverstedt, Joakim Lindblad, and Natasa Sladoje. In , 2022.
• Methods for Reliable Image Registration: Algorithms, Distance Measures, and Representations. Johan Öfverstedt. Ph.D. thesis, Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology nr 2107, Acta Universitatis Upsaliensis, Uppsala, 2022. (fulltext, preview image).
• Fast computation of mutual information in the frequency domain with applications to global multimodal image alignment. Johan Öfverstedt, Joakim Lindblad, and Natasa Sladoje. In Pattern Recognition Letters, volume 159, pp 196-203, 2022. (DOI, Fulltext, Pre-print in arXiv, fulltext:print).
• Contrastive Learning for Equivariant Multimodal Image Representations. Elisabeth Wetzer, Nicolas Pielawski, Eva Breznik, Johan Öfverstedt, Jiahao Lu, Carolina Wählby, Joakim Lindblad, and Natasa Sladoje. In , Cambridge University, 2021.
• ImageJ and CellProfiler: Complements in Open?Source Bioimage Analysis. Ellen T.A. Dobson, Beth Cimini, Anna H. Klemm, Carolina Wählby, Anne E. Carpenter, and Kevin W Eliceiri. In Current Protocols in Microbiology, volume 1, number 5, John Wiley & Sons, 2021. (DOI, https://currentprotocols.onlinelibrary.wiley.com/doi/epdf/10.1002/cpz1.89).
• Icke-invasiv kontroll av cellförändringar i munslemhinnan. Jan-Michael Hirsch, Neda Haj-Hosseini, Carina Krüger Weiner, Bengt Hasséus, and Joakim Lindblad. In Tandläkartidningen, number 9, pp 48-55, 2021. (External link).
• Computer-assisted analysis of multimodal image data—perspectives and conclusion. Natasa Sladoje, Joakim Lindblad, and Perrine Paul-Gilloteaux. In Imaging Modalities for Biological and Preclinical Research: A Compendium, Volume 2, pp III.4.g-1-III.4.g-10, Institute of Physics Publishing (IOPP), 2021. (DOI).
• Introduction—computer-assisted analysis of multimodal image data. Natasa Sladoje and Joakim Lindblad. In Imaging Modalities for Biological and Preclinical Research: A Compendium, Volume 2, pp III.4.a-1-III.4.a-3, Institute of Physics Publishing (IOPP), 2021. (DOI).
• Discrete Geometry and Mathematical Morphology: First International Joint Conference, DGMM 2021, Uppsala, Sweden, May 24–27, 2021, Proceedings. Joakim Lindblad, Filip Malmberg, and Natasa Sladoje (eds). Volume 12708 of Lecture Notes in Computer Science, Springer, Springer Nature Switzerland AG 2021, 2021. (DOI).
• CytoBrowser: a browser-based collaborative annotation platform for whole slide images. Christopher Rydell and Joakim Lindblad. In F1000 Research, volume 10, 2021. (DOI).

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